HL_7AZS_176

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7AZS|1|23SB|U|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_176 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0781

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7AZS|1|23SB|C|1741
7AZS|1|23SB|U|1742
7AZS|1|23SB|U|1743
7AZS|1|23SB|C|1744
7AZS|1|23SB|G|1745
7AZS|1|23SB|G|1746

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain L2B

50S ribosomal protein L2