HL_7AZS_183

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7AZS|1|23SB|U|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_183 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.1298

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7AZS|1|23SB|G|1974
7AZS|1|23SB|G|1975
7AZS|1|23SB|U|1976
7AZS|1|23SB|A|1977
7AZS|1|23SB|A|1978
7AZS|1|23SB|G|1979
7AZS|1|23SB|U|1980
7AZS|1|23SB|U|1981
7AZS|1|23SB|C|1982

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain ASIB

Transfer RNA; tRNA

Chain L14B

50S ribosomal protein L14