HL_7AZS_188

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7AZS|1|23SB|A|2283, 7AZS|1|23SB|C|2290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_188 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.0631

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7AZS|1|23SB|C|2279
7AZS|1|23SB|U|2280
7AZS|1|23SB|A|2281
7AZS|1|23SB|A|2282
7AZS|1|23SB|A|2283
7AZS|1|23SB|A|2284
7AZS|1|23SB|G|2285
7AZS|1|23SB|G|2286
7AZS|1|23SB|U|2287
7AZS|1|23SB|A|2288
7AZS|1|23SB|A|2289
7AZS|1|23SB|C|2290
7AZS|1|23SB|G|2291

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L16B

50S ribosomal protein L16

Chain L27B

50S ribosomal protein L27