HL_7AZS_196

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_196 not in the Motif Atlas

Geometric match to HL_4WF9_058

Geometric discrepancy: 0.1369

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7AZS|1|23SB|C|2566
7AZS|1|23SB|OMU|2567
7AZS|1|23SB|G|2568
7AZS|1|23SB|U|2569
7AZS|1|23SB|U|2570
7AZS|1|23SB|C|2571
7AZS|1|23SB|G|2572

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA