HL_7AZS_200

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7AZS|1|23SB|G|2767, 7AZS|1|23SB|C|2771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_200 not in the Motif Atlas

Geometric match to HL_7A0S_065

Geometric discrepancy: 0.3126

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

7AZS|1|23SB|C|2761
7AZS|1|23SB|U|2762
7AZS|1|23SB|G|2763
7AZS|1|23SB|A|2764
7AZS|1|23SB|A|2765
7AZS|1|23SB|A|2766
7AZS|1|23SB|G|2767
7AZS|1|23SB|C|2768
7AZS|1|23SB|A|2769
7AZS|1|23SB|U|2770
7AZS|1|23SB|C|2771
7AZS|1|23SB|U|2772
7AZS|1|23SB|A|2773
7AZS|1|23SB|A|2774
7AZS|1|23SB|G|2775

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L13B

50S ribosomal protein L13

Chain L6B

50S ribosomal protein L6