HL_7AZS_229

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_229 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.0893

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AZS|1|16SA|C|1151
7AZS|1|16SA|A|1152
7AZS|1|16SA|G|1153
7AZS|1|16SA|C|1154
7AZS|1|16SA|C|1155
7AZS|1|16SA|7MG|1156

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain MRNA

mRNA

Chain S12A

30S ribosomal protein S12