HL_7AZS_248
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7AZS_248 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.2306
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
7AZS|1|PSIB|A|31
7AZS|1|PSIB|PSU|32
7AZS|1|PSIB|U|33
7AZS|1|PSIB|G|34
7AZS|1|PSIB|A|35
7AZS|1|PSIB|A|36
7AZS|1|PSIB|MIA|37
7AZS|1|PSIB|A|38
7AZS|1|PSIB|PSU|39
Current chains
- Chain PSIB
- Phe-tRNA
Nearby chains
- Chain 16SB
- Small subunit ribosomal RNA; SSU rRNA
- Chain ESIB
- Transfer RNA; tRNA
- Chain MRNB
- mRNA
- Chain S13B
- 30S ribosomal protein S13
- Chain S9B
- 30S ribosomal protein S9
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