HL_7AZS_250

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

A(PSU)UGAA(MIA)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_250 not in the Motif Atlas

Homologous match to HL_5J8B_118

Geometric discrepancy: 0.2219

The information below is about HL_5J8B_118

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

54

Unit IDs

7AZS|1|TRNA|A|31
7AZS|1|TRNA|PSU|32
7AZS|1|TRNA|U|33
7AZS|1|TRNA|G|34
7AZS|1|TRNA|A|35
7AZS|1|TRNA|A|36
7AZS|1|TRNA|MIA|37
7AZS|1|TRNA|A|38
7AZS|1|TRNA|PSU|39

Current chains

Chain TRNA

Phe-tRNA

Nearby chains

Chain L18A

50S ribosomal protein L18