HL_7AZS_251

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_251 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.3648

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7AZS|1|23SA|G|2319
7AZS|1|23SA|A|2320
7AZS|1|23SA|C|2321
7AZS|1|23SA|G|2322
7AZS|1|23SA|G|2323
7AZS|1|23SA|A|2324
7AZS|1|23SA|A|2325
7AZS|1|23SA|A|2326
7AZS|1|23SA|U|2327

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L5A

50S ribosomal protein L5