HL_7AZY_007

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7AZY|1|E|G|218, 7AZY|1|E|A|219, 7AZY|1|E|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZY_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.0845

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7AZY|1|E|G|216
7AZY|1|E|U|217
7AZY|1|E|G|218
7AZY|1|E|A|219
7AZY|1|E|G|220
7AZY|1|E|A|221
7AZY|1|E|A|222
7AZY|1|E|U|223
7AZY|1|E|C|224

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain G

5.8S ribosomal RNA; 5.8S rRNA

Chain p

60S ribosomal protein L4-A

Chain q

60S ribosomal protein L26-A