HL_7AZY_055

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7AZY|1|E|A|2637, 7AZY|1|E|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZY_055 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0897

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7AZY|1|E|U|2633
7AZY|1|E|U|2634
7AZY|1|E|A|2635
7AZY|1|E|A|2636
7AZY|1|E|A|2637
7AZY|1|E|C|2638
7AZY|1|E|G|2639
7AZY|1|E|A|2640
7AZY|1|E|U|2641
7AZY|1|E|A|2642
7AZY|1|E|A|2643
7AZY|1|E|C|2644
7AZY|1|E|G|2645

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L29

Chain o

60S ribosomal protein L10

Chain u

60S ribosomal protein L21-A