3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
7B5K|1|A|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B5K_012 not in the Motif Atlas
Homologous match to HL_7A0S_010
Geometric discrepancy: 0.1069
The information below is about HL_7A0S_010
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

7B5K|1|A|C|305
7B5K|1|A|U|306
7B5K|1|A|G|307
7B5K|1|A|G|308
7B5K|1|A|A|309
7B5K|1|A|A|310
7B5K|1|A|A|311
7B5K|1|A|G|312

Current chains

Chain A
23S rRNA

Nearby chains

Chain U
50S ribosomal protein L24

Coloring options:


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