3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUUAGG
Length
6 nucleotides
Bulged bases
7B5K|1|A|A|547
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B5K_019 not in the Motif Atlas
Geometric match to HL_2CZJ_007
Geometric discrepancy: 0.298
The information below is about HL_2CZJ_007
Detailed Annotation
UNCG variation
Broad Annotation
UNCG variation
Motif group
HL_23696.2
Basepair signature
cWW-F-F
Number of instances in this motif group
8

Unit IDs

7B5K|1|A|C|544
7B5K|1|A|U|545
7B5K|1|A|U|546
7B5K|1|A|A|547
7B5K|1|A|G|548
7B5K|1|A|G|549

Current chains

Chain A
23S rRNA

Nearby chains

Chain J
50S ribosomal protein L13
Chain R
50S ribosomal protein L21

Coloring options:


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