HL_7B5K_058

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_058 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1232

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7B5K|1|A|G|2303
7B5K|1|A|G|2304
7B5K|1|A|U|2305
7B5K|1|A|C|2306
7B5K|1|A|G|2307
7B5K|1|A|G|2308
7B5K|1|A|A|2309
7B5K|1|A|C|2310
7B5K|1|A|A|2311
7B5K|1|A|U|2312
7B5K|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5