HL_7B5K_059

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_059 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1085

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7B5K|1|A|U|2324
7B5K|1|A|G|2325
7B5K|1|A|C|2326
7B5K|1|A|A|2327
7B5K|1|A|A|2328
7B5K|1|A|U|2329
7B5K|1|A|G|2330
7B5K|1|A|G|2331

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain W

50S ribosomal protein L27

Chain x

Transfer RNA; tRNA