HL_7B5K_069

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7B5K|1|A|G|2751, 7B5K|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_069 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0852

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7B5K|1|A|C|2745
7B5K|1|A|U|2746
7B5K|1|A|G|2747
7B5K|1|A|A|2748
7B5K|1|A|A|2749
7B5K|1|A|A|2750
7B5K|1|A|G|2751
7B5K|1|A|C|2752
7B5K|1|A|A|2753
7B5K|1|A|U|2754
7B5K|1|A|C|2755
7B5K|1|A|U|2756
7B5K|1|A|A|2757
7B5K|1|A|A|2758
7B5K|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13