HL_7B5K_082

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_082 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1054

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7B5K|1|a|A|320
7B5K|1|a|A|321
7B5K|1|a|C|322
7B5K|1|a|U|323
7B5K|1|a|G|324
7B5K|1|a|A|325
7B5K|1|a|G|326
7B5K|1|a|A|327
7B5K|1|a|C|328
7B5K|1|a|A|329
7B5K|1|a|C|330
7B5K|1|a|G|331
7B5K|1|a|G|332
7B5K|1|a|U|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20