HL_7B5K_092

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7B5K|1|a|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_092 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2626

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7B5K|1|a|C|840
7B5K|1|a|C|841
7B5K|1|a|U|842
7B5K|1|a|U|843
7B5K|1|a|G|844
7B5K|1|a|A|845
7B5K|1|a|G|846

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S18