HL_7B5K_100

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

7B5K|1|a|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B5K_100 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2473

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

7B5K|1|a|G|1134
7B5K|1|a|U|1135
7B5K|1|a|C|1136
7B5K|1|a|C|1137
7B5K|1|a|G|1138
7B5K|1|a|G|1139
7B5K|1|a|C|1140

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9