3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUCCGGC
Length
7 nucleotides
Bulged bases
7B5K|1|a|C|1136
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B5K_100 not in the Motif Atlas
Homologous match to HL_4LFB_026
Geometric discrepancy: 0.2473
The information below is about HL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87954.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

7B5K|1|a|G|1134
7B5K|1|a|U|1135
7B5K|1|a|C|1136
7B5K|1|a|C|1137
7B5K|1|a|G|1138
7B5K|1|a|G|1139
7B5K|1|a|C|1140

Current chains

Chain a
16S rRNA

Nearby chains

Chain i
30S ribosomal protein S9

Coloring options:


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