HL_7B5K_107
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGGUGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 7B5K|1|x|G|16, 7B5K|1|x|U|17, 7B5K|1|x|G|18, 7B5K|1|x|G|19, 7B5K|1|x|U|20, 7B5K|1|x|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7B5K_107 not in the Motif Atlas
- Homologous match to HL_6UFM_001
- Geometric discrepancy: 0.1873
- The information below is about HL_6UFM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_04642.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7B5K|1|x|C|13
7B5K|1|x|A|14
7B5K|1|x|G|15
7B5K|1|x|G|16
7B5K|1|x|U|17
7B5K|1|x|G|18
7B5K|1|x|G|19
7B5K|1|x|U|20
7B5K|1|x|U|21
7B5K|1|x|A|22
7B5K|1|x|G|23
Current chains
- Chain x
- P-site Isoleucine tRNA (77-MER)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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