HL_7B5K_108
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAUAAG
- Length
- 9 nucleotides
- Bulged bases
- 7B5K|1|x|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7B5K_108 not in the Motif Atlas
- Homologous match to HL_4V90_033
- Geometric discrepancy: 0.129
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7B5K|1|x|C|32
7B5K|1|x|C|33
7B5K|1|x|U|34
7B5K|1|x|G|35
7B5K|1|x|A|36
7B5K|1|x|U|37
7B5K|1|x|A|38
7B5K|1|x|A|39
7B5K|1|x|G|40
Current chains
- Chain x
- P-site Isoleucine tRNA (77-MER)
Nearby chains
- Chain 6
- mRNA
- Chain 9
- Transfer RNA; tRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
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