3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CCUGAUAAG
Length
9 nucleotides
Bulged bases
7B5K|1|x|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B5K_108 not in the Motif Atlas
Homologous match to HL_4V90_033
Geometric discrepancy: 0.129
The information below is about HL_4V90_033
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

7B5K|1|x|C|32
7B5K|1|x|C|33
7B5K|1|x|U|34
7B5K|1|x|G|35
7B5K|1|x|A|36
7B5K|1|x|U|37
7B5K|1|x|A|38
7B5K|1|x|A|39
7B5K|1|x|G|40

Current chains

Chain x
P-site Isoleucine tRNA (77-MER)

Nearby chains

Chain 6
mRNA
Chain 9
Transfer RNA; tRNA
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain i
30S ribosomal protein S9

Coloring options:


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