3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
7B7D|1|2|C|233
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B7D_005 not in the Motif Atlas
Geometric match to HL_2ZNI_001
Geometric discrepancy: 0.0941
The information below is about HL_2ZNI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7B7D|1|2|C|230
7B7D|1|2|U|231
7B7D|1|2|U|232
7B7D|1|2|C|233
7B7D|1|2|G|234
7B7D|1|2|G|235

Current chains

Chain 2
18S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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