3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
7B7D|1|2|C|402, 7B7D|1|2|G|403
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B7D_010 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.1228
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7B7D|1|2|C|393
7B7D|1|2|C|394
7B7D|1|2|U|395
7B7D|1|2|G|396
7B7D|1|2|A|397
7B7D|1|2|G|398
7B7D|1|2|A|399
7B7D|1|2|A|400
7B7D|1|2|A|401
7B7D|1|2|C|402
7B7D|1|2|G|403
7B7D|1|2|G|404

Current chains

Chain 2
18S rRNA

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain T
40S ribosomal protein S6-A
Chain V
40S ribosomal protein S8-A
Chain d
40S ribosomal protein S24-A

Coloring options:


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