3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B7D_025 not in the Motif Atlas
Homologous match to HL_4V88_210
Geometric discrepancy: 0.0938
The information below is about HL_4V88_210
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7B7D|1|2|A|1084
7B7D|1|2|G|1085
7B7D|1|2|A|1086
7B7D|1|2|A|1087
7B7D|1|2|A|1088
7B7D|1|2|U|1089

Current chains

Chain 2
18S rRNA

Nearby chains

Chain R
40S ribosomal protein S2
Chain e
40S ribosomal protein S26-B

Coloring options:


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