3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UAAGCAUA
Length
8 nucleotides
Bulged bases
7B7D|1|LA|A|40
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B7D_038 not in the Motif Atlas
Geometric match to HL_4WF9_006
Geometric discrepancy: 0.0949
The information below is about HL_4WF9_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

7B7D|1|LA|U|38
7B7D|1|LA|A|39
7B7D|1|LA|A|40
7B7D|1|LA|G|41
7B7D|1|LA|C|42
7B7D|1|LA|A|43
7B7D|1|LA|U|44
7B7D|1|LA|A|45

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LN
60S ribosomal protein L13-A
Chain LP
60S ribosomal protein L15-A
Chain LW
60S ribosomal protein L28
Chain Lk
60S ribosomal protein L42-A

Coloring options:


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