HL_7B7D_044

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7B7D|1|LA|G|218, 7B7D|1|LA|A|219, 7B7D|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_044 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0946

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7B7D|1|LA|G|216
7B7D|1|LA|U|217
7B7D|1|LA|G|218
7B7D|1|LA|A|219
7B7D|1|LA|G|220
7B7D|1|LA|A|221
7B7D|1|LA|A|222
7B7D|1|LA|U|223
7B7D|1|LA|C|224

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LU

60S ribosomal protein L26-A