HL_7B7D_052

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7B7D|1|LA|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_052 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0862

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7B7D|1|LA|U|640
7B7D|1|LA|C|641
7B7D|1|LA|U|642
7B7D|1|LA|U|643
7B7D|1|LA|G|644
7B7D|1|LA|A|645
7B7D|1|LA|A|646
7B7D|1|LA|A|647
7B7D|1|LA|C|648
7B7D|1|LA|A|649

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LW

60S ribosomal protein L28

Chain La

60S ribosomal protein L32