HL_7B7D_059

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7B7D|1|LA|A|913, 7B7D|1|LA|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_059 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0855

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7B7D|1|LA|G|910
7B7D|1|LA|C|911
7B7D|1|LA|G|912
7B7D|1|LA|A|913
7B7D|1|LA|A|914
7B7D|1|LA|A|915
7B7D|1|LA|G|916
7B7D|1|LA|A|917
7B7D|1|LA|C|918

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LP

60S ribosomal protein L15-A

Chain Lf

60S ribosomal protein L37-A