HL_7B7D_060

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7B7D|1|LA|C|959, 7B7D|1|LA|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_060 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0556

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7B7D|1|LA|C|958
7B7D|1|LA|C|959
7B7D|1|LA|U|960
7B7D|1|LA|C|961
7B7D|1|LA|A|962
7B7D|1|LA|G|963

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LW

60S ribosomal protein L28

Chain LX

60S ribosomal protein L29

Chain Lk

60S ribosomal protein L42-A