3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAUGAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B7D_064 not in the Motif Atlas
Homologous match to HL_8C3A_026
Geometric discrepancy: 0.0732
The information below is about HL_8C3A_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_44398.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7B7D|1|LA|G|1148
7B7D|1|LA|G|1149
7B7D|1|LA|A|1150
7B7D|1|LA|U|1151
7B7D|1|LA|G|1152
7B7D|1|LA|A|1153
7B7D|1|LA|A|1154
7B7D|1|LA|C|1155

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LB
5S ribosomal RNA; 5S rRNA
Chain LI
60S ribosomal protein L7-A
Chain La
60S ribosomal protein L32
Chain Lb
60S ribosomal protein L33-A

Coloring options:


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