HL_7B7D_077

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_077 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3852

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7B7D|1|LA|C|1759
7B7D|1|LA|A|1760
7B7D|1|LA|C|1761
7B7D|1|LA|C|1762
7B7D|1|LA|U|1763
7B7D|1|LA|U|1764
7B7D|1|LA|U|1765
7B7D|1|LA|G|1766

Current chains

Chain LA

25S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L19-A

Chain Lq

60S ribosomal protein L22-A