HL_7B7D_082

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_082 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3295

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7B7D|1|LA|G|1952
7B7D|1|LA|G|1953
7B7D|1|LA|G|1954
7B7D|1|LA|U|1955
7B7D|1|LA|A|2093
7B7D|1|LA|C|2094

Current chains

Chain LA

25S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L19-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A