HL_7B7D_094

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7B7D|1|LA|A|2637, 7B7D|1|LA|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7B7D_094 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0658

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7B7D|1|LA|U|2633
7B7D|1|LA|U|2634
7B7D|1|LA|A|2635
7B7D|1|LA|A|2636
7B7D|1|LA|A|2637
7B7D|1|LA|C|2638
7B7D|1|LA|G|2639
7B7D|1|LA|A|2640
7B7D|1|LA|U|2641
7B7D|1|LA|A|2642
7B7D|1|LA|A|2643
7B7D|1|LA|C|2644
7B7D|1|LA|G|2645

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LX

60S ribosomal protein L29

Chain Lp

60S ribosomal protein L21-A