3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAGUGGAAG
Length
9 nucleotides
Bulged bases
7B7D|1|Sn|U|16, 7B7D|1|Sn|G|18, 7B7D|1|Sn|G|19, 7B7D|1|Sn|A|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7B7D_119 not in the Motif Atlas
Homologous match to HL_6PMO_003
Geometric discrepancy: 0.145
The information below is about HL_6PMO_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7B7D|1|Sn|C|13
7B7D|1|Sn|A|14
7B7D|1|Sn|G|15
7B7D|1|Sn|U|16
7B7D|1|Sn|G|18
7B7D|1|Sn|G|19
7B7D|1|Sn|A|20
7B7D|1|Sn|A|21
7B7D|1|Sn|G|22

Current chains

Chain Sn
tRNA

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain LM
60S ribosomal protein L11-B
Chain Lk
60S ribosomal protein L42-A

Coloring options:


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