HL_7BGD_006

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7BGD|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BGD_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0988

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7BGD|1|a|G|267
7BGD|1|a|G|268
7BGD|1|a|U|269
7BGD|1|a|A|270
7BGD|1|a|A|271
7BGD|1|a|C|272
7BGD|1|a|G|273
7BGD|1|a|G|274
7BGD|1|a|C|275

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20