HL_7BGD_008

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BGD_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1034

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BGD|1|a|A|328
7BGD|1|a|A|329
7BGD|1|a|C|330
7BGD|1|a|U|331
7BGD|1|a|G|332
7BGD|1|a|A|333
7BGD|1|a|G|334
7BGD|1|a|A|335
7BGD|1|a|C|336
7BGD|1|a|A|337
7BGD|1|a|C|338
7BGD|1|a|G|339
7BGD|1|a|G|340
7BGD|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20