HL_7BGD_015

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BGD_015 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.2785

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7BGD|1|a|C|697
7BGD|1|a|G|698
7BGD|1|a|G|699
7BGD|1|a|U|700
7BGD|1|a|G|701
7BGD|1|a|A|702
7BGD|1|a|A|703
7BGD|1|a|A|704
7BGD|1|a|U|705
7BGD|1|a|G|706

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain k

30S ribosomal protein S11