HL_7BHP_006

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7BHP|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_006 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.4833

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7BHP|1|L5|U|204
7BHP|1|L5|C|205
7BHP|1|L5|U|206
7BHP|1|L5|G|207
7BHP|1|L5|A|208
7BHP|1|L5|U|209
7BHP|1|L5|C|210
7BHP|1|L5|G|211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32