Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7BHP_0021/L5/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_7BHP_0031/L5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7BHP_0041/L5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_7BHP_0061/L5/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_7BHP_0071/L5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_7BHP_0081/L5/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7BHP_0091/L5/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_7BHP_0101/L5/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7BHP_0111/L5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7BHP_0121/L5/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7BHP_0161/L5/1170:1191No text annotation
HL_7BHP_0181/L5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7BHP_0881/L5/1364:1373No text annotation
HL_7BHP_0201/L5/1389:1394GNRA
homologous
HL_5TBW_016
NA
HL_7BHP_0841/L5/1404:1413No text annotation
HL_7BHP_0221/L5/1436:1448No text annotation
HL_7BHP_0231/L5/1479:1486No text annotation
homologous
HL_8C3A_018
NA
HL_7BHP_0241/L5/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_7BHP_0251/L5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_7BHP_0261/L5/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_7BHP_0271/L5/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7BHP_0291/L5/1816:1823No text annotation
homologous
HL_8C3A_024
NA
HL_7BHP_0301/L5/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_7BHP_0311/L5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_7BHP_0341/L5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_7BHP_0351/L5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7BHP_0361/L5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7BHP_0371/L5/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_7BHP_0381/L5/2487:2491No text annotation
geometric
HL_2Y8W_001
NA
HL_7BHP_0391/L5/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_7BHP_0411/L5/2578:2583GNRA
homologous
HL_5TBW_036
NA
HL_7BHP_0421/L5/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_7BHP_0431/L5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_7BHP_0441/L5/2704:2712tRNA D-loop
geometric
HL_2ZZN_004
HL_64640.1
HL_7BHP_0451/L5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_7BHP_0461/L5/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_7BHP_0471/L5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_7BHP_0481/L5/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_7BHP_0501/L5/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7BHP_0511/L5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_7BHP_0521/L5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_7BHP_0531/L5/3724:3729GNRA
homologous
HL_8C3A_048
NA
HL_7BHP_0551/L5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_7BHP_0561/L5/3873:3882No text annotation
homologous
HL_5TBW_051
NA
HL_7BHP_0581/L5/4097:4112No text annotation
HL_7BHP_0601/L5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_7BHP_0611/L5/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_7BHP_0621/L5/4250:4258No text annotation
homologous
HL_5TBW_056
NA
HL_7BHP_0631/L5/4270:4277Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7BHP_0641/L5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7BHP_0651/L5/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_7BHP_0661/L5/4352:4362No text annotation
geometric
HL_4V83_139
NA
HL_7BHP_0671/L5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_7BHP_0681/L5/4474:4481No text annotation
homologous
HL_8C3A_063
NA
HL_7BHP_0691/L5/4497:4503No text annotation
homologous
HL_8C3A_064
NA
HL_7BHP_0701/L5/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_7BHP_0711/L5/4603:4608GNRA
homologous
HL_8C3A_066
NA
HL_7BHP_0721/L5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7BHP_0731/L5/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_7BHP_0751/L5/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.6
HL_7BHP_0861/L5/4972:4986No text annotation
HL_7BHP_0761/L5/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_7BHP_0781/L7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7BHP_0791/L7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7BHP_0871/L8/47:56Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_7BHP_0801/L8/55:62No text annotation
geometric
HL_4P5J_004
NA
HL_7BHP_0811/L8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_7BHP_0821/L8/107:112No text annotation
homologous
HL_5TBW_075
NA

Problematic loops

#loop idProblemSequence
HL_7BHP_001No text annotation
HL_7BHP_005No text annotation
HL_7BHP_013No text annotation
HL_7BHP_014No text annotation
HL_7BHP_015No text annotation
HL_7BHP_017Mini UNCG
HL_7BHP_019No text annotation
HL_7BHP_021No text annotation
HL_7BHP_028Mini UNCG
HL_7BHP_032No text annotation
HL_7BHP_033No text annotation
HL_7BHP_040Mini UNCG
HL_7BHP_049No text annotation
HL_7BHP_085No text annotation
HL_7BHP_054No text annotation
HL_7BHP_057No text annotation
HL_7BHP_059Mini UNCG
HL_7BHP_074No text annotation
HL_7BHP_077No text annotation
HL_7BHP_083No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7BHP_0021/L5/6:7,
1/L8/149:151
Single bulged C
homologous
IL_8C3A_002
NA
IL_7BHP_0031/L5/12:14,
1/L8/143:144
Single bulged U
homologous
IL_8C3A_003
NA
IL_7BHP_0041/L5/16:18,
1/L8/139:141
Isolated non-canonical cWW pair
geometric
IL_6IA2_005
NA
IL_7BHP_0051/L5/26:27,
1/L5/55:57
No text annotation
homologous
IL_8C3A_004
NA
IL_7BHP_0061/L5/30:37,
1/L5/44:52
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_7BHP_0071/L5/81:88,
1/L5/96:102
No text annotation
homologous
IL_8C3A_006
NA
IL_7BHP_0081/L5/118:122,
1/L5/147:153
No text annotation
IL_7BHP_0091/L5/125:126,
1/L5/142:144
Single bulged C
geometric
IL_1DQF_001
NA
IL_7BHP_1761/L5/169:173,
1/L5/263:266
No text annotation
IL_7BHP_0111/L5/180:189,
1/L5/252:256
No text annotation
IL_7BHP_0121/L5/195:196,
1/L5/244:246
Single bulged C
geometric
IL_1DQF_001
NA
IL_7BHP_0131/L5/199:201,
1/L5/214:215
Single bulged U
homologous
IL_8C3A_013
NA
IL_7BHP_0141/L5/339:342,
1/L8/32:33
Minor groove platform
geometric
IL_7RQB_073
NA
IL_7BHP_0151/L5/348:350,
1/L8/25:26
Single bulged A
homologous
IL_8C3A_014
NA
IL_7BHP_0161/L5/387:390,
1/L5/401:414
No text annotation
homologous
IL_8C3A_015
NA
IL_7BHP_0171/L5/415:421,
1/L8/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7BHP_0181/L5/443:446,
1/L5/1300:1304
No text annotation
IL_7BHP_1681/L5/448:450,
1/L5/1297:1298
No text annotation
IL_7BHP_0221/L5/466:472,
1/L5/682:689
No text annotation
IL_7BHP_0241/L5/486:490,
1/L5/663:670
No text annotation
IL_7BHP_0281/L5/500:505,
1/L5/653:655
No text annotation
IL_7BHP_0291/L5/508:510,
1/L5/649:650
Single bulged A
geometric
IL_4R4V_003
IL_14190.1
IL_7BHP_0301/L5/709:710,
1/L5/1286:1288
Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_7BHP_0311/L5/723:724,
1/L5/942:945
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_7BHP_0321/L5/727:731,
1/L5/938:939
No text annotation
IL_7BHP_0331/L5/732:735,
1/L5/928:937
No text annotation
IL_7BHP_0341/L5/737:740,
1/L5/925:926
No text annotation
IL_7BHP_0351/L5/740:742,
1/L5/922:925
No text annotation
IL_7BHP_0361/L5/745:752,
1/L5/911:919
No text annotation
geometric
IL_5TBW_020
NA
IL_7BHP_0371/L5/1073:1074,
1/L5/1237:1239
Single bulged A
geometric
IL_2VPL_002
IL_14190.1
IL_7BHP_0391/L5/1082:1084,
1/L5/1213:1217
Isolated near basepair
geometric
IL_7A0S_030
IL_42997.4
IL_7BHP_0401/L5/1086:1087,
1/L5/1209:1211
Single bulged C
geometric
IL_3W3S_001
NA
IL_7BHP_0441/L5/1357:1360,
1/L5/1379:1382
No text annotation
IL_7BHP_1701/L5/1357:1361,
1/L5/1376:1382
No text annotation
IL_7BHP_0451/L5/1360:1361,
1/L5/1376:1379
Multiple bulged bases
geometric
IL_6JXM_001
NA
IL_7BHP_0461/L5/1425:1429,
1/L5/1455:1460
Triple sheared related
geometric
IL_5J7L_063
NA
IL_7BHP_0471/L5/1431:1434,
1/L5/1450:1453
Double sheared
geometric
IL_4KZD_002
IL_58355.1
IL_7BHP_0481/L5/1467:1468,
1/L5/1496:1498
Single bulged A
homologous
IL_8C3A_026
NA
IL_7BHP_0491/L5/1474:1476,
1/L5/1489:1490
Single stack bend
geometric
IL_7A0S_005
IL_15011.1
IL_7BHP_0501/L5/1520:1526,
1/L5/1648:1657
No text annotation
IL_7BHP_0511/L5/1545:1546,
1/L5/1612:1614
Single bulged A
homologous
IL_8C3A_031
NA
IL_7BHP_0521/L5/1550:1551,
1/L5/1576:1578
Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_7BHP_0531/L5/1551:1555,
1/L5/1572:1576
Triple sheared
homologous
IL_8C3A_033
NA
IL_7BHP_0541/L5/1586:1589,
1/L5/1605:1607
Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7BHP_0551/L5/1590:1592,
1/L5/1603:1604
Single bulged U
homologous
IL_8C3A_035
NA
IL_7BHP_0561/L5/1624:1626,
1/L5/1636:1640
No text annotation
homologous
IL_8C3A_036
NA
IL_7BHP_0571/L5/1671:1673,
1/L5/1682:1684
Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7BHP_0581/L5/1686:1688,
1/L5/1848:1851
No text annotation
IL_7BHP_0601/L5/1723:1725,
1/L5/1838:1839
Single bulged G
homologous
IL_8C3A_040
NA
IL_7BHP_0611/L5/1732:1737,
1/L5/1792:1797
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7BHP_0621/L5/1737:1738,
1/L5/1790:1792
Minor groove platform
homologous
IL_8C3A_042
NA
IL_7BHP_0631/L5/1739:1744,
1/L5/1786:1789
C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7BHP_0641/L5/1746:1749,
1/L5/1781:1784
Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_7BHP_0651/L5/1749:1751,
1/L5/1779:1781
Isolated non-canonical cWW pair
geometric
IL_4M4O_002
NA
IL_7BHP_0661/L5/1753:1756,
1/L5/1775:1777
No text annotation
geometric
IL_4V84_070
NA
IL_7BHP_1711/L5/1753:1758,
1/L5/1774:1777
No text annotation
IL_7BHP_0691/L5/1814:1816,
1/L5/1823:1824
Single bulged G
homologous
IL_8C3A_048
NA
IL_7BHP_0701/L5/1858:1860,
1/L5/1874:1876
Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7BHP_0721/L5/1905:1909,
1/L5/2067:2071
UAA/GAN
homologous
IL_8C3A_051
NA
IL_7BHP_0731/L5/1911:1918,
1/L5/2064:2065
SSU/LSU pseudoknot
geometric
IL_4V9F_038
IL_11411.1
IL_7BHP_0741/L5/1918:1920,
1/L5/2063:2064
No text annotation
IL_7BHP_0751/L5/1920:1922,
1/L5/2062:2063
Single bulged C
geometric
IL_3SN2_001
NA
IL_7BHP_0761/L5/1926:1933,
1/L5/2053:2058
No text annotation
homologous
IL_8C3A_054
NA
IL_7BHP_0771/L5/1933:1944,
1/L5/2038:2053
No text annotation
geometric
IL_5TBW_052
NA
IL_7BHP_0781/L5/1946:1948,
1/L5/2035:2036
Single bulged U
homologous
IL_5TBW_053
NA
IL_7BHP_0791/L5/1957:1968,
1/L5/2019:2026
No text annotation
IL_7BHP_0801/L5/2083:2085,
1/L5/2272:2273
No text annotation
IL_7BHP_0811/L5/2290:2292,
1/L5/2342:2345
No text annotation
homologous
IL_8C3A_061
NA
IL_7BHP_0821/L5/2299:2301,
1/L5/2334:2335
Single bulged A
homologous
IL_8C3A_062
NA
IL_7BHP_0831/L5/2302:2309,
1/L5/2329:2333
Kink-turn
homologous
IL_8C3A_063
NA
IL_7BHP_0841/L5/2312:2314,
1/L5/2325:2326
Single bulged A
geometric
IL_7RQB_033
NA
IL_7BHP_0851/L5/2358:2364,
1/L5/3858:3863
No text annotation
homologous
IL_8C3A_065
NA
IL_7BHP_0861/L5/2406:2409,
1/L5/2783:2784
Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_74641.1
IL_7BHP_0871/L5/2415:2419,
1/L5/2427:2429
C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_7BHP_0881/L5/2446:2450,
1/L5/2509:2514
UAA/GAN
homologous
IL_8C3A_067
NA
IL_7BHP_0901/L5/2542:2547,
1/L5/2772:2774
Isolated non-canonical cWW pair
geometric
IL_4WF9_041
IL_30229.1
IL_7BHP_0911/L5/2549:2550,
1/L5/2768:2770
Single bulged U
geometric
IL_7KVT_002
IL_97561.1
IL_7BHP_0921/L5/2589:2593,
1/L5/2752:2756
Triple sheared
geometric
IL_7RQB_075
NA
IL_7BHP_0931/L5/2613:2614,
1/L5/2724:2726
Single bulged C
homologous
IL_8C3A_075
NA
IL_7BHP_0941/L5/2614:2615,
1/L5/2722:2724
Single stack bend
geometric
IL_4C7O_002
NA
IL_7BHP_1731/L5/2646:2648,
1/L5/2685:2688
No text annotation
geometric
IL_8VTW_081
NA
IL_7BHP_0961/L5/2651:2653,
1/L5/2681:2682
Single bulged G
geometric
IL_5J7L_019
NA
IL_7BHP_0971/L5/2656:2662,
1/L5/2672:2678
Kink-turn
homologous
IL_5TBW_073
NA
IL_7BHP_0981/L5/2832:2838,
1/L5/3850:3853
No text annotation
homologous
IL_5TBW_074
NA
IL_7BHP_0991/L5/2844:2846,
1/L5/3842:3844
No text annotation
homologous
IL_8C3A_081
NA
IL_7BHP_1001/L5/2847:2850,
1/L5/3840:3841
Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7BHP_1741/L5/2847:2855,
1/L5/3837:3841
No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_7BHP_1011/L5/2850:2855,
1/L5/3837:3840
No text annotation
homologous
IL_8C3A_083
NA
IL_7BHP_1021/L5/2867:2872,
1/L5/2877:2883
tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_7BHP_1031/L5/2889:2891,
1/L5/3610:3612
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7BHP_1041/L5/2896:2897,
1/L5/3602:3605
No text annotation
homologous
IL_8C3A_086
NA
IL_7BHP_1051/L5/3632:3633,
1/L5/3827:3829
Single bulged A
homologous
IL_5TBW_082
NA
IL_7BHP_1061/L5/3660:3665,
1/L5/3677:3684
Kink-turn related
homologous
IL_5TBW_083
NA
IL_7BHP_1071/L5/3700:3703,
1/L5/3749:3750
Major groove intercalation
homologous
IL_5TBW_084
NA
IL_7BHP_1081/L5/3704:3705,
1/L5/3745:3748
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7BHP_1091/L5/3708:3710,
1/L5/3741:3742
Single stack bend
homologous
IL_8C3A_091
NA
IL_7BHP_1101/L5/3710:3714,
1/L5/3739:3741
No text annotation
homologous
IL_8C3A_092
NA
IL_7BHP_1111/L5/3715:3721,
1/L5/3732:3738
No text annotation
homologous
IL_8C3A_093
NA
IL_7BHP_1121/L5/3780:3781,
1/L5/3811:3814
No text annotation
homologous
IL_8C3A_094
NA
IL_7BHP_1131/L5/3781:3792,
1/L5/3808:3811
No text annotation
geometric
IL_5TBW_090
NA
IL_7BHP_1141/L5/3895:3898,
1/L5/4563:4565
No text annotation
homologous
IL_8C3A_096
NA
IL_7BHP_1151/L5/3900:3902,
1/L5/4558:4561
No text annotation
homologous
IL_8C3A_097
NA
IL_7BHP_1161/L5/3913:3915,
1/L5/4388:4389
Single bulged U
homologous
IL_8C3A_098
NA
IL_7BHP_1171/L5/3916:3917,
1/L5/4384:4387
Minor groove platform
homologous
IL_5TBW_094
NA
IL_7BHP_1181/L5/3927:3929,
1/L5/4181:4184
No text annotation
homologous
IL_8C3A_100
NA
IL_7BHP_1191/L5/4082:4088,
1/L5/4161:4164
No text annotation
homologous
IL_8C3A_106
NA
IL_7BHP_1201/L5/4191:4192,
1/L5/4202:4204
Single bulged A
homologous
IL_8C3A_107
NA
IL_7BHP_1211/L5/4243:4245,
1/L5/4263:4267
Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_7BHP_1221/L5/4291:4293,
1/L5/4317:4318
Single bulged A
geometric
IL_5TBW_013
NA
IL_7BHP_1231/L5/4295:4298,
1/L5/4312:4315
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_7BHP_1241/L5/4347:4350,
1/L5/4364:4365
Single stack bend
geometric
IL_4C7O_002
NA
IL_7BHP_1251/L5/4400:4405,
1/L5/4439:4444
No text annotation
IL_7BHP_1261/L5/4405:4407,
1/L5/4435:4439
Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_7BHP_1271/L5/4412:4416,
1/L5/4426:4430
No text annotation
homologous
IL_8C3A_114
NA
IL_7BHP_1281/L5/4453:4454,
1/L5/4526:4528
Major groove platform
homologous
IL_5TBW_107
NA
IL_7BHP_1291/L5/4456:4458,
1/L5/4520:4524
No text annotation
homologous
IL_8C3A_116
NA
IL_7BHP_1301/L5/4458:4459,
1/L5/4517:4520
Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7BHP_1311/L5/4466:4468,
1/L5/4489:4491
Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_7BHP_1751/L5/4466:4470,
1/L5/4485:4491
No text annotation
IL_7BHP_1321/L5/4468:4470,
1/L5/4485:4489
No text annotation
IL_7BHP_1331/L5/4495:4497,
1/L5/4503:4505
Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_7BHP_1341/L5/4537:4538,
1/L5/4547:4549
Single bulged A
homologous
IL_5TBW_113
NA
IL_7BHP_1351/L5/4580:4582,
1/L5/4721:4723
No text annotation
geometric
IL_3ICQ_003
NA
IL_7BHP_1361/L5/4582:4585,
1/L5/4717:4721
Double sheared
geometric
IL_5J7L_256
NA
IL_7BHP_1371/L5/4590:4592,
1/L5/4618:4620
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7BHP_1381/L5/4596:4603,
1/L5/4608:4614
8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7BHP_1391/L5/4624:4629,
1/L5/4669:4673
No text annotation
IL_7BHP_1401/L5/4632:4637,
1/L5/4662:4666
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7BHP_1411/L5/4638:4640,
1/L5/4659:4661
Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.1
IL_7BHP_1421/L5/4641:4642,
1/L5/4655:4658
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_7BHP_1431/L5/4680:4685,
1/L5/4705:4710
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_7BHP_1461/L5/4749:4751,
1/L5/4948:4951
No text annotation
IL_7BHP_1471/L5/4756:4765,
1/L5/4869:4877
No text annotation
IL_7BHP_1481/L5/4769:4771,
1/L5/4863:4865
Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_68118.1
IL_7BHP_1491/L5/4885:4889,
1/L5/4930:4934
Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_71154.1
IL_7BHP_1501/L5/4891:4896,
1/L5/4924:4928
No text annotation
IL_7BHP_1521/L5/4972:4975,
1/L5/4983:4986
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7BHP_1531/L5/4992:4994,
1/L5/5057:5059
Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_01003.1
IL_7BHP_1541/L5/4996:4997,
1/L5/5053:5055
Single bulged C
geometric
IL_1KUQ_002
IL_05642.1
IL_7BHP_1551/L5/5000:5002,
1/L5/5045:5050
Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_7BHP_1561/L5/5003:5009,
1/L5/5039:5044
No text annotation
IL_7BHP_1571/L5/5012:5014,
1/L5/5035:5036
Single bulged U
homologous
IL_8C3A_140
NA
IL_7BHP_1581/L5/5014:5017,
1/L5/5032:5035
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7BHP_1591/L7/15:16,
1/L7/62:64
Single bulged A
homologous
IL_5TBW_372
NA
IL_7BHP_1601/L7/21:27,
1/L7/52:57
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7BHP_1611/L7/28:29,
1/L7/48:51
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_7BHP_1621/L7/71:78,
1/L7/98:104
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7BHP_1631/L7/79:81,
1/L7/95:97
Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7BHP_1641/L7/82:85,
1/L7/92:94
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7BHP_1651/L8/64:66,
1/L8/92:95
Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7BHP_001No text annotation
IL_7BHP_010No text annotation
IL_7BHP_166No text annotation
IL_7BHP_167Isolated non-canonical cWW pair
IL_7BHP_019Isolated non-canonical cWW pair
IL_7BHP_020Single bulged C
IL_7BHP_021Isolated non-canonical cWW pair
IL_7BHP_023Multiple bulged bases
IL_7BHP_025Tandem non-canonical cWW pairs
IL_7BHP_026Isolated non-canonical cWW pair
IL_7BHP_027No text annotation
IL_7BHP_038No text annotation
IL_7BHP_041No text annotation
IL_7BHP_169Tandem non-canonical cWW pairs
IL_7BHP_042Isolated cWH basepair
IL_7BHP_043Tandem non-canonical cWW pairs
IL_7BHP_059No text annotation
IL_7BHP_067Single bulged U
IL_7BHP_068Tandem non-canonical cWW pairs
IL_7BHP_071No text annotation
IL_7BHP_089No text annotation
IL_7BHP_172No text annotation
IL_7BHP_095Double sheared
IL_7BHP_144No text annotation
IL_7BHP_145Tandem non-canonical cWW pairs
IL_7BHP_151Single bulged C

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7BHP_0011/L5/112:116,
1/L5/155:160,
1/L5/275:278
No text annotation
J3_7BHP_0181/L5/196:199,
1/L5/215:228,
1/L5/240:244
No text annotation
J3_7BHP_0191/L5/351:367,
1/L5/374:379,
1/L8/21:24
No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_7BHP_0021/L5/380:387,
1/L5/414:415,
1/L8/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_7BHP_0201/L5/380:390,
1/L5/401:415,
1/L8/19:20
No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_7BHP_0211/L5/451:456,
1/L5/700:705,
1/L5/1292:1296
No text annotation
J3_7BHP_0031/L5/712:713,
1/L5/955:976,
1/L5/1278:1284
No text annotation
J3_7BHP_0041/L5/1531:1537,
1/L5/1622:1624,
1/L5/1640:1643
No text annotation
homologous
J3_8C3A_003
NA
J3_7BHP_0051/L5/1546:1548,
1/L5/1580:1584,
1/L5/1609:1612
No text annotation
homologous
J3_8C3A_004
NA
J3_7BHP_0061/L5/1726:1727,
1/L5/1802:1806,
1/L5/1832:1837
No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_7BHP_0071/L5/2393:2399,
1/L5/2805:2807,
1/L5/2819:2822
No text annotation
homologous
J3_8C3A_006
NA
J3_7BHP_0081/L5/2402:2405,
1/L5/2785:2791,
1/L5/2800:2802
No text annotation
homologous
J3_8C3A_007
NA
J3_7BHP_0091/L5/2440:2445,
1/L5/2515:2519,
1/L5/2536:2537
No text annotation
homologous
J3_5TBW_010
NA
J3_7BHP_0221/L5/2451:2456,
1/L5/2465:2476,
1/L5/2501:2508
No text annotation
J3_7BHP_0101/L5/2551:2555,
1/L5/2572:2575,
1/L5/2757:2767
No text annotation
J3_7BHP_0111/L5/2575:2576,
1/L5/2585:2589,
1/L5/2756:2757
No text annotation
homologous
J3_8C3A_054
NA
J3_7BHP_0231/L5/2598:2602,
1/L5/2737:2738,
1/L5/2742:2747
No text annotation
homologous
J3_8C3A_055
NA
J3_7BHP_0121/L5/3937:3939,
1/L5/4074:4078,
1/L5/4168:4173
Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_7BHP_0241/L5/4091:4097,
1/L5/4112:4129,
1/L5/4155:4158
No text annotation
J3_7BHP_0251/L5/4228:4230,
1/L5/4331:4342,
1/L5/4370:4375
No text annotation
homologous
J3_8C3A_056
NA
J3_7BHP_0131/L5/4241:4243,
1/L5/4267:4269,
1/L5/4278:4283
No text annotation
homologous
J3_5TBW_013
NA
J3_7BHP_0141/L5/4463:4466,
1/L5/4491:4493,
1/L5/4507:4513
No text annotation
homologous
J3_5TBW_014
NA
J3_7BHP_0261/L5/4751:4754,
1/L5/4879:4883,
1/L5/4936:4948
No text annotation
J3_7BHP_0151/L5/4970:4972,
1/L5/4986:4991,
1/L5/5060:5063
No text annotation
J3_7BHP_0161/L7/9:14,
1/L7/65:66,
1/L7/109:110
No text annotation
homologous
J3_5TBW_045
NA
J3_7BHP_0271/L8/44:45,
1/L8/58:64,
1/L8/95:99
No text annotation
homologous
J3_8C3A_060
NA
J3_7BHP_0171/L8/44:55,
1/L8/62:64,
1/L8/95:99
No text annotation
geometric
J3_4WF9_001
J3_47707.1
J4_7BHP_0011/L5/111:112,
1/L5/278:283,
1/L5/304:310,
1/L5/327:330
No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_7BHP_0021/L5/196:199,
1/L5/215:222,
1/L5/226:228,
1/L5/240:244
No text annotation
J4_7BHP_0031/L5/981:983,
1/L5/1070:1072,
1/L5/1240:1246,
1/L5/1264:1273
No text annotation
J4_7BHP_0041/L5/2365:2371,
1/L5/2389:2391,
1/L5/2824:2829,
1/L5/3856:3857
No text annotation
J4_7BHP_0051/L5/2406:2410,
1/L5/2434:2439,
1/L5/2538:2539,
1/L5/2777:2784
No text annotation
J4_7BHP_0061/L5/2409:2410,
1/L5/2434:2439,
1/L5/2538:2539,
1/L5/2777:2783
No text annotation
J4_7BHP_0071/L5/2618:2619,
1/L5/2637:2642,
1/L5/2692:2698,
1/L5/2718:2719
No text annotation
J4_7BHP_0081/L5/3634:3638,
1/L5/3650:3654,
1/L5/3690:3694,
1/L5/3821:3826
No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_7BHP_0091/L5/3696:3699,
1/L5/3751:3753,
1/L5/3771:3780,
1/L5/3814:3819
No text annotation
J4_7BHP_0101/L5/4231:4235,
1/L5/4289:4291,
1/L5/4318:4319,
1/L5/4328:4330
No text annotation
J4_7BHP_0111/L5/4587:4590,
1/L5/4620:4621,
1/L5/4676:4678,
1/L5/4712:4715
No text annotation
J5_7BHP_0011/L5/19:21,
1/L8/35:42,
1/L8/101:106,
1/L8/113:114,
1/L8/136:138
No text annotation
homologous
J5_8C3A_001
NA
J5_7BHP_0021/L5/1333:1340,
1/L5/1516:1519,
1/L5/1658:1661,
1/L5/2288:2290,
1/L5/2345:2353
No text annotation
J5_7BHP_0031/L5/2855:2863,
1/L5/2887:2888,
1/L5/3613:3614,
1/L5/3618:3626,
1/L5/3835:3837
No text annotation
homologous
J5_8C3A_004
NA
J5_7BHP_0041/L5/3903:3910,
1/L5/4392:4400,
1/L5/4444:4453,
1/L5/4528:4534,
1/L5/4552:4557
No text annotation
J5_7BHP_0051/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4228,
1/L5/4375:4381
No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_7BHP_0011/L5/21:26,
1/L5/57:67,
1/L5/74:78,
1/L5/105:109,
1/L5/332:339,
1/L8/33:35
No text annotation
J6_7BHP_0021/L5/1352:1355,
1/L5/1384:1388,
1/L5/1395:1399,
1/L5/1418:1421,
1/L5/1464:1466,
1/L5/1499:1504
No text annotation
J6_7BHP_0031/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4230,
1/L5/4331:4342,
1/L5/4370:4381
No text annotation
J7_7BHP_0011/L5/1666:1671,
1/L5/1684:1685,
1/L5/1852:1855,
1/L5/1879:1884,
1/L5/1895:1899,
1/L5/2077:2078,
1/L5/2278:2283
No text annotation

Problematic loops

No problematic loops


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