HL_7BHP_013

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUUCCCGCGCGGGGG

Length

16 nucleotides

Bulged bases

7BHP|1|L5|U|514

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_013 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3405

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7BHP|1|L5|C|511
7BHP|1|L5|U|512
7BHP|1|L5|U|513
7BHP|1|L5|U|514
7BHP|1|L5|C|515
7BHP|1|L5|C|516
7BHP|1|L5|C|517
7BHP|1|L5|G|518
7BHP|1|L5|C|519
7BHP|1|L5|G|642
7BHP|1|L5|C|643
7BHP|1|L5|G|644
7BHP|1|L5|G|645
7BHP|1|L5|G|646
7BHP|1|L5|G|647
7BHP|1|L5|G|648

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a