HL_7BHP_016

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

7BHP|1|L5|G|1178, 7BHP|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|G|1170
7BHP|1|L5|G|1171
7BHP|1|L5|C|1172
7BHP|1|L5|G|1173
7BHP|1|L5|G|1174
7BHP|1|L5|A|1175
7BHP|1|L5|C|1176
7BHP|1|L5|U|1177
7BHP|1|L5|G|1178
7BHP|1|L5|U|1179
7BHP|1|L5|C|1180
7BHP|1|L5|C|1181
7BHP|1|L5|C|1182
7BHP|1|L5|C|1183
7BHP|1|L5|A|1184
7BHP|1|L5|G|1185
7BHP|1|L5|U|1186
7BHP|1|L5|G|1187
7BHP|1|L5|C|1188
7BHP|1|L5|G|1189
7BHP|1|L5|C|1190
7BHP|1|L5|C|1191

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like