HL_7BHP_019
3D structure
- PDB id
- 7BHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human Ebp1 - 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7BHP|1|L5|C|1365, 7BHP|1|L5|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BHP_019 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2713
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7BHP|1|L5|C|1363
7BHP|1|L5|U|1364
7BHP|1|L5|C|1365
7BHP|1|L5|G|1366
7BHP|1|L5|C|1367
7BHP|1|L5|A|1368
7BHP|1|L5|C|1369
7BHP|1|L5|G|1370
7BHP|1|L5|A|1371
7BHP|1|L5|A|1372
7BHP|1|L5|A|1373
7BHP|1|L5|G|1374
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain LY
- 60S ribosomal protein L26
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