HL_7BHP_032

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACGGUGGCAAGUCGCUAAGGAGGUGUAACAACUCACC

Length

39 nucleotides

Bulged bases

7BHP|1|L5|G|1975, 7BHP|1|L5|A|1983, 7BHP|1|L5|U|1997, 7BHP|1|L5|G|2007

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|G|1968
7BHP|1|L5|G|1969
7BHP|1|L5|A|1970
7BHP|1|L5|C|1971
7BHP|1|L5|G|1972
7BHP|1|L5|G|1973
7BHP|1|L5|U|1974
7BHP|1|L5|G|1975
7BHP|1|L5|G|1976
7BHP|1|L5|C|1977
7BHP|1|L5|A|1983
7BHP|1|L5|A|1984
7BHP|1|L5|G|1985
7BHP|1|L5|U|1986
7BHP|1|L5|C|1994
7BHP|1|L5|G|1995
7BHP|1|L5|C|1996
7BHP|1|L5|U|1997
7BHP|1|L5|A|1998
7BHP|1|L5|A|1999
7BHP|1|L5|G|2000
7BHP|1|L5|G|2001
7BHP|1|L5|A|2002
7BHP|1|L5|G|2003
7BHP|1|L5|G|2005
7BHP|1|L5|U|2006
7BHP|1|L5|G|2007
7BHP|1|L5|U|2008
7BHP|1|L5|A|2009
7BHP|1|L5|A|2010
7BHP|1|L5|C|2011
7BHP|1|L5|A|2012
7BHP|1|L5|A|2013
7BHP|1|L5|C|2014
7BHP|1|L5|U|2015
7BHP|1|L5|C|2016
7BHP|1|L5|A|2017
7BHP|1|L5|C|2018
7BHP|1|L5|C|2019

Current chains

Chain L5

28S ribosomal RNA

Nearby chains