HL_7BHP_033

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGGCGGCGCGCCGCGCCCGGAGCCCCGCGGACGCUACG

Length

59 nucleotides

Bulged bases

7BHP|1|L5|U|2097, 7BHP|1|L5|G|2109, 7BHP|1|L5|G|2117, 7BHP|1|L5|G|2118, 7BHP|1|L5|C|2119, 7BHP|1|L5|C|2123, 7BHP|1|L5|C|2255, 7BHP|1|L5|U|2267, 7BHP|1|L5|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|C|2087
7BHP|1|L5|A|2088
7BHP|1|L5|G|2089
7BHP|1|L5|U|2090
7BHP|1|L5|C|2091
7BHP|1|L5|G|2092
7BHP|1|L5|A|2093
7BHP|1|L5|G|2094
7BHP|1|L5|A|2095
7BHP|1|L5|G|2096
7BHP|1|L5|U|2097
7BHP|1|L5|G|2098
7BHP|1|L5|G|2099
7BHP|1|L5|A|2100
7BHP|1|L5|C|2101
7BHP|1|L5|G|2102
7BHP|1|L5|G|2103
7BHP|1|L5|G|2104
7BHP|1|L5|A|2105
7BHP|1|L5|G|2106
7BHP|1|L5|C|2107
7BHP|1|L5|G|2108
7BHP|1|L5|G|2109
7BHP|1|L5|G|2115
7BHP|1|L5|C|2116
7BHP|1|L5|G|2117
7BHP|1|L5|G|2118
7BHP|1|L5|C|2119
7BHP|1|L5|G|2120
7BHP|1|L5|C|2121
7BHP|1|L5|G|2122
7BHP|1|L5|C|2123
7BHP|1|L5|C|2127
7BHP|1|L5|G|2128
7BHP|1|L5|C|2129
7BHP|1|L5|G|2130
7BHP|1|L5|C|2131
7BHP|1|L5|C|2249
7BHP|1|L5|C|2250
7BHP|1|L5|G|2251
7BHP|1|L5|G|2252
7BHP|1|L5|A|2253
7BHP|1|L5|G|2254
7BHP|1|L5|C|2255
7BHP|1|L5|C|2256
7BHP|1|L5|C|2257
7BHP|1|L5|C|2258
7BHP|1|L5|G|2259
7BHP|1|L5|C|2260
7BHP|1|L5|G|2261
7BHP|1|L5|G|2262
7BHP|1|L5|A|2263
7BHP|1|L5|C|2264
7BHP|1|L5|G|2265
7BHP|1|L5|C|2266
7BHP|1|L5|U|2267
7BHP|1|L5|A|2268
7BHP|1|L5|C|2269
7BHP|1|L5|G|2270

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Lr

60S ribosomal protein L28