HL_7BHP_042

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7BHP|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_042 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1989

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7BHP|1|L5|G|2624
7BHP|1|L5|U|2625
7BHP|1|L5|U|2626
7BHP|1|L5|C|2627
7BHP|1|L5|U|2628
7BHP|1|L5|C|2629
7BHP|1|L5|U|2630
7BHP|1|L5|U|2631
7BHP|1|L5|U|2632

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22