HL_7BHP_049

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGUCGGUCGCGGCCGGCGCCUAGC

Length

25 nucleotides

Bulged bases

7BHP|1|L5|U|2908, 7BHP|1|L5|G|2910, 7BHP|1|L5|G|3589, 7BHP|1|L5|G|3590, 7BHP|1|L5|A|3596

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|G|2901
7BHP|1|L5|G|2902
7BHP|1|L5|G|2903
7BHP|1|L5|U|2904
7BHP|1|L5|C|2905
7BHP|1|L5|G|2906
7BHP|1|L5|G|2907
7BHP|1|L5|U|2908
7BHP|1|L5|C|2909
7BHP|1|L5|G|2910
7BHP|1|L5|C|3584
7BHP|1|L5|G|3585
7BHP|1|L5|G|3586
7BHP|1|L5|C|3587
7BHP|1|L5|C|3588
7BHP|1|L5|G|3589
7BHP|1|L5|G|3590
7BHP|1|L5|C|3591
7BHP|1|L5|G|3592
7BHP|1|L5|C|3593
7BHP|1|L5|C|3594
7BHP|1|L5|U|3595
7BHP|1|L5|A|3596
7BHP|1|L5|G|3597
7BHP|1|L5|C|3598

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19