HL_7BHP_059

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

7BHP|1|L5|G|4141, 7BHP|1|L5|C|4142, 7BHP|1|L5|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_059 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.1455

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

7BHP|1|L5|C|4138
7BHP|1|L5|G|4139
7BHP|1|L5|C|4140
7BHP|1|L5|G|4141
7BHP|1|L5|C|4142
7BHP|1|L5|G|4143
7BHP|1|L5|C|4144
7BHP|1|L5|C|4145
7BHP|1|L5|G|4146

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a