HL_7BHP_074

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_074 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1968

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7BHP|1|L5|C|4774
7BHP|1|L5|C|4775
7BHP|1|L5|G|4776
7BHP|1|L5|C|4858
7BHP|1|L5|C|4859
7BHP|1|L5|G|4860

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LO

60S ribosomal protein L13a