HL_7BL2_053

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL2_053 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2536

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7BL2|1|A|C|2248
7BL2|1|A|U|2249
7BL2|1|A|G|2250
7BL2|1|A|G|2251
7BL2|1|A|G|2252
7BL2|1|A|G|2253
7BL2|1|A|C|2254
7BL2|1|A|G|2255
7BL2|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9P1

GTPase ObgE/CgtA

Chain W

50S ribosomal protein L27