HL_7BL2_054

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7BL2|1|A|A|2268, 7BL2|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BL2_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1827

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7BL2|1|A|C|2264
7BL2|1|A|U|2265
7BL2|1|A|A|2266
7BL2|1|A|A|2267
7BL2|1|A|A|2268
7BL2|1|A|G|2269
7BL2|1|A|A|2270
7BL2|1|A|G|2271
7BL2|1|A|U|2272
7BL2|1|A|A|2273
7BL2|1|A|A|2274
7BL2|1|A|C|2275
7BL2|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27